I am a 4th-year Ph.D. student in Computer Science at University of Illinois Urbana-Champaign, fortunately advised by Prof. Jiawei Han. Before that, I was an undergraduate student in Electrical Engineering of Tsinghua University, fortunately advised by Prof. Yong Li. During the past, I spent time at Google, Amazon Search, and Microsoft Research (both Redmond and Beijing).

My research is supported by Apple PhD Fellowship and Yunni and Maxine Pao Memorial Fellowship. For further information, please see my CV (last update: 2025.03.25).

Research Interests: My main research lies at the intersection of large generative models (e.g., large language models and diffusion models), multimodal data and information networks. In particular, I focus on how large models can integrate text, network, and multimodal data for solving real world problems including information retrieval and knowledge discovery. My current research interest is LLM agent, reasoning and RL.

• Large Generative Models + Graphs (Survey): representation learning (Heterformer, Edgeformers), pretraining (Patton), graph plug-in (Graph-CoT) and multimodal synthesis (InstructG2I, GraphGPT-o).
• Large Generative Models + IR: reasoning-retrieval interleaved LLM with RL (Search-R1), LLM alignment (LarPO), RAG and long-context LLM (LongRAG), semantic indexer (LMIndexer), generative retrieval (RIPOR) and generative recommendation (UniMP).
• Large Generative Models + Science (Survey): general science (MAPLE, ToTER), geospatial science (GeoWise), climate science (CoDiCast), chemistry (ChemRAG) and healthcare (RAM-EHR).

I am actively working on Search-R1, an efficient RL framework for Deepseek-R1 style reasoning + search engine calling (OpenAI DeepResearch) LLM training.

I am also maintaining awesome github repos on Large Language Models on Graphs and Multimodal Learning on Graphs with a survey paper. Feel free to have a look!

I will be on the job market starting in Fall 2025 and am open to both academic faculty positions and industrial research roles. If you believe I might be a good fit for your institution or organization, I’d love to connect! — please feel free to reach out at bowenj4[AT]illinois.edu

News

• [2025.5] One paper on weather forecasting with diffusion model has been accepted by IJCAI 2025!
• [2025.5] One paper on LLM alignment has been accepted by ICML 2025!

Selected Publications [Full List]

(* denotes equal contribution)

Preprints

• Search-R1: Training LLMs to Reason and Leverage Search Engines with Reinforcement Learning
  Bowen Jin, Hansi Zeng, Zhenrui Yue, Dong Wang, Hamed Zamani, Jiawei Han.
  preprint 2025.
  [PDF] [Code] [Resource] [Media] 1000+ stars in two weeks

• ChemRAG: Benchmarking Retrieval-Augmented Generation for Chemistry
  Xianrui Zhong, Bowen Jin, Siru Ouyang, Yanzhen Shen, Qiao Jin, Yin Fang, Zhiyong Lu, Jiawei Han.
  preprint 2025.
  [PDF] [Code]

Tutorials

• Integrating Textual and Graph Data: Advancing Knowledge Discovery with Semantic and Structural Insights
  Bowen Jin, Yu Zhang, Yunyi Zhang, Jiawei Han.
  SDM 2025 (Tutorial).
  [PDF] [Tutorial Page]

• Long Context vs. RAG: Strategies for Processing Long Documents in LLMs
  Xinze Li, Yushi Bai, Bowen Jin, Fengbin Zhu, Liangming Pan and Yixin Cao.
  SIGIR 2025 (Tutorial).
  [PDF] [Tutorial Page]

• Bridging Text Data and Graph Data: Towards Semantics and Structure-aware Knowledge Discovery
  Bowen Jin, Yu Zhang, Sha Li, Jiawei Han.
  WSDM 2024 (Tutorial).
  [PDF] [Tutorial Page]

Surveys

• Large Language Models on Graphs: A Comprehensive Survey
  Bowen Jin*, Gang Liu*, Chi Han*, Meng Jiang, Heng Ji, Jiawei Han.
  Transactions on Knowledge and Data Engineering (TKDE) 2024.
  [PDF] [Repo] 900+ stars

• A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery
  Yu Zhang*, Xiusi Chen*, Bowen Jin*, Sheng Wang, Shuiwang Ji, Wei Wang, Jiawei Han.
  EMNLP 2024.
  [PDF] [Repo] 500+ stars

2025

• LLM Alignment as Retriever Optimization: An Information Retrieval Perspective
  Bowen Jin, Jinsung Yoon, Zhen Qin, Ziqi Wang, Wei Xiong, Yu Meng, Jiawei Han, Sercan O. Arik.
  ICML 2025.
  [PDF] [Code]

• Long-Context LLMs Meet RAG: Overcoming Challenges for Long Inputs in RAG
  Bowen Jin, Jinsung Yoon, Jiawei Han, Sercan O. Arik.
  ICLR 2025.
  [PDF] [Code]

• GRAPHGPT-O: Synergistic Multimodal Comprehension and Generation on Graphs
  Yi Fang*, Bowen Jin*, Jiacheng Shen*, Sirui Ding, Qiaoyu Tan, Jiawei Han.
  CVPR 2025.
  [PDF] [Code]

• CoDiCast: Conditional Diffusion Model for Global Weather Forecasting with Uncertainty Quantification
  Jimeng Shi, Bowen Jin, Jiawei Han, Sundararaman Gopalakrishnan, Giri Narasimhan.
  IJCAI 2025.
  [PDF] [Code]

• Improving Scientific Document Retrieval with Concept Coverage-based Query Set Generation
  SeongKu Kang, Bowen Jin, Wonbin Kweon, Yu Zhang, Dongha Lee, Jiawei Han, Hwanjo Yu.
  WSDM 2025.
  [PDF] [Code]

2024

• InstructG2I: Synthesizing Images from Multimodal Attributed Graphs
  Bowen Jin, Ziqi Pang, Bingjun Guo, Yu-Xiong Wang, Jiaxuan You, Jiawei Han.
  NeurIPs 2024.
  [PDF] [Code] [Model] [Project Page] [Media Coverage]

• Graph Chain-of-Thought: Augmenting Large Language Models by Reasoning on Graphs
  Bowen Jin, Chulin Xie, Jiawei Zhang, Kashob Kumar Roy, Yu Zhang, Suhang Wang, Yu Meng, Jiawei Han.
  ACL 2024 (findings).
  [PDF] [Code] [Data]

• Language Models as Semantic Indexers
  Bowen Jin, Hansi Zeng, Guoyin Wang, Xiusi Chen, Tianxin Wei, Ruirui Li, et al.
  ICML 2024.
  [PDF] [Code]

• Investigating Instruction Tuning Large Language Models on Graphs
  Kerui Zhu*, Bo-Wei Huang*, Bowen Jin*, Yizhu Jiao, Ming Zhong, Kevin Chang, Shou-De Lin, Jiawei Han.
  COLM 2024.
  [PDF] [Code]

• Grasping the Essentials: Tailoring Large Language Models for Zero-Shot Relation Extraction
  Sizhe Zhou, Yu Meng, Bowen Jin, Jiawei Han.
  EMNLP 2024.
  [PDF] [Code]

• Scalable and Effective Generative Information Retrieval
  Hansi Zeng, Chen Luo, Bowen Jin, Sheikh Muhammad Sarwar, Tianxin Wei, Hamed Zamani.
  WWW 2024.
  [PDF] [Code]

• Improving Retrieval in Theme-specific Applications using a Corpus Topical Taxonomy
  SeongKu Kang, Shivam Agarwal, Bowen Jin, Dongha Lee, Hwanjo Yu, Jiawei Han.
  WWW 2024.
  [PDF] [Code]

• Towards Universal Multi-Modal Personalization: A Language Model Empowered Generative Paradigm
  Tianxin Wei, Bowen Jin, Ruirui Li, Hansi Zeng, Zhengyang Wang, et al.
  ICLR 2024.
  [PDF] [Code]

2023

• Learning Multiplex Representations on Text-Attributed Graphs with One Language Model Encoder
  Bowen Jin, Wentao Zhang, Yu Zhang, Yu Meng, Han Zhao, Jiawei Han.
  NeurIPs 2023 (GLFrontiers).
  [PDF] [Code]

• Heterformer: Transformer-based Deep Node Representation Learning on Heterogeneous Text-Rich Networks
  Bowen Jin, Yu Zhang, Qi Zhu, Jiawei Han.
  KDD 2023.
  [PDF] [Code]

• Patton: Language Model Pretraining on Text-rich Networks
  Bowen Jin, Wentao Zhang, Yu Zhang, Yu Meng, Xinyang Zhang, Qi Zhu, Jiawei Han.
  ACL 2023 (Oral).
  [PDF] [Code]

• Edgeformers: Graph-Empowered Transformers for Representation Learning on Textual-Edge Networks
  Bowen Jin, Yu Zhang, Yu Meng, Jiawei Han.
  ICLR 2023 (Poster).
  [PDF] [Code]

• Weakly Supervised Multi-Label Classification of Full-Text Scientific Papers
  Yu Zhang, Bowen Jin, Xiusi Chen, Yanzhen Shen, Yunyi Zhang, Yu Meng, Jiawei Han.
  KDD 2023.
  [PDF] [Code]

• Text Augmented Open Knowledge Graph Completion via Pre-Trained Language Models
  Pengcheng Jiang, Shivam Agarwal, Bowen Jin, Xuan Wang, Jimeng Sun, Jiawei Han
  ACL 2023 (findings).
  [PDF] [Code]

• The Effect of Metadata on Scientific Literature Tagging: A Cross-Field Cross-Model Study
  Yu Zhang, Bowen Jin, Qi Zhu, Yu Meng, Jiawei Han.
  WWW 2023.
  [PDF] [Code]

Before Ph.D.

• Multi-behavior Recommendation with Graph Convolutional Networks
  Bowen Jin, Chen Gao, Xiangnan He, Depeng Jin, Yong Li.
  SIGIR 2020.
  [PDF] [Code]

Education

• University of Illinois Urbana-Champaign, Ph.D. in Computer Science (2021 - Present).
• Tsinghua University, B.S. in Electrical Engineering and Statistics (2017 - 2021).

Professional Experience

• Google Cloud Research - Student Researcher
  2024.05-now
• Amazon Search - Applied Scientist Intern
  2023.05-2023.12
• Microsoft Research - Research Intern
  2022.05-2022.09
• Microsoft Research (Asia) - Research Intern
  2020.09-2021.3

Professional Service

• Reviewer:
  • WSDM 2023, KDD 2023, NeurIPs 2023
  • ICLR 2024, WWW 2024, SDM 2024, ACL 2024, ICML 2024, COLM 2024, NeurIPs 2024
  • ICLR 2025, WWW 2025, ACL 2025, ICML 2025, NeurIPs 2025
• Journal Reviewer:
  • IEEE Transactions on Knowledge and Data Engineering (TKDE)
  • ACM Transactions on Information Systems (TOIS)
  • IEEE Transactions on Big Data (TBD)
• Guest Instructor:
  • TAMU, Spring 2025 - CSCE 689 - Special Topics in NLP for Science
  • Northwestern University, Spring 2025 - CS 396: Reasoning and Planning in the Foundation Model Era
  • UIUC, Fall 2023 - CS 512: Data Mining Principles
• Lead TA:
  • UIUC, Spring 2024 - CS 412: Introduction to Data Mining

Talks

• [2025.5] Search-R1 at BAAI.
• [2025.3] Search-R1 at Jina.AI.
• [2025.3] Search-R1 at UIUC-NLP Seminar.
• [2024.11] long-context LLM and RAG at BuzzRobot.
• [2024.10] Multimodal learning on graphs at Emory.

Miscellaneous

I started to play a traditional Chinese instrument, Sheng at the age of eight. Here is a concert record of mine. Hope you enjoy it!:)

I’m a “universal” ball fan and enjoy working out. If you cannot find me in office, catch me at the gym. 😃

Contact

Email: bowenj4[AT]illinois.edu